Late fees for delayed filing of GSTR-9 (Annual Return) are ₹200 per day ( ₹ 100 1 0 0 CGST + ₹ 100 1 0 0 SGST), capped at 0.5% of the total turnover ( 0.25 % 0 . 2 5 % CGST + 0.25 % 0 . 2 5 % SGST). For GSTR-9C, while no specific late fee is provided, a general penalty of ₹25,000 may apply for non-compliance, with recent notifications waiving excess fees for certain periods.
50% (0.25% under the CGST Law + 0.25% under the SGST / UTGST Law) of turnover in the State/UT. These provisions apply to the filing of GSTR-9; however, no specific requirements apply to GSTR-9C, and hence, the filing of GSTR-9 and non-filing of GSTR-9C could be subject to a general penalty of Rs 25,000.
GSTR 9 is an annual return for GST-registered businesses, detailing inward and outward supplies, ITC, and taxes paid. GSTR 9C is a reconciliation statement for businesses with an annual turnover exceeding Rs. 2 crores, requiring a certified reconciliation between the audited financial statement and GSTR 9.
Therefore, upon non –filing of GST returns or missing out the GST due dates, the GST law prescribes a general penalty. The maximum penalty that may be imposed is Rs. 5,000. The taxpayer will be required to pay interest on late payment of GST at a rate of 18% annually in addition to the late payment penalty.
According to the latest update, a late fee of ₹50 per day is now applicable, capping at a maximum of ₹2,000. If the tax liability is nil, the maximum late fee is reduced to ₹500. Previously, a late fee of ₹200 per day was imposed if GSTR-4 was not filed by the due date, with the maximum late fee not exceeding ₹5,000.
Scope of the Scheme: The waiver scheme applies to only those taxpayers who have failed to file GSTR-9 earlier. To avail benefits of this scheme, taxpayers have to file the return before March 31, 2025. Already Paid Late Fees: No refunds will be issued if the taxpayer has already filed the return with late payment fees.
GSTR9 Late Fee and Penalty
As per section 47, late fees for not filing the GSTR 9 within the due date is Rs.100 per day, per Act. That means late fees of Rs.100 under CGST and Rs.100 under SGST are applicable in case of delay. Accordingly, the total liability is Rs.200 per day of default.
Under the GST law, penalty for late filing of GST returns include a late fee of Rs. 50 per day (Rs. 25 each under CGST and SGST) for delayed return filing, capped at Rs. 5,000, and an interest rate of 18% per annum on outstanding tax amounts.
If your return is over 60 days late, there's also a minimum penalty for late filing; it's the lesser of $525 (for tax returns required to be filed in 2026) or 100 percent of the tax owed. See Topic no. 304 for information about extensions of time to file if you can't file on time.
1. Login into GST portal: Navigate to > Services > User Services > My Applications. 2. On Navigating to 'My Applications' page, the taxpayer has to select 'Apply for Waiver Scheme under Section 128A' option under 'Application type' dropdown.
The due date to file GSTR-9C is the same as due date for submitting the Annual returns in GSTR-9. Hence, the GSTR-9C must be filed on or before 31st December of the year subsequent to the relevant FY under audit. The due date can be extended by the Government if deemed necessary.
The following category of tax persons are exempted from payment of 1% of GST in Cash 1. Registered taxpayers who have paid income tax above Rs 1.00 in Income Tax during the last two years continuously 2. Taxpayers who have zero-rated supplies without payment of duty and claimed refund of more than Rs 1.00 lac 3.
The turnover limit for a mandatory GST audit is ₹2 crore. If a taxpayer's annual turnover exceeds this amount, they must have their accounts audited by a qualified Chartered or Cost Accountant.
An offender not paying tax or making short-payments has to pay a penalty of 10% of the tax amount due, subject to a minimum of Rs. 10,000. Therefore, the penalty will be high at 100% of the tax amount when the offender has evaded i.e., where there is a deliberate fraud.
If you collect GST/HST, penalties also apply for filing late. The CRA calculates the late filing fee for your GST/HST taxes using the formula A + (B x C). In this formula, A is 1% of the amount you owe, B is 25% of A, and C is the number of months the return is late.
Late filing of Income tax return will attract penalty u/s 234F up to Rs. 5,000, late filing interest at the rate of 1% per month (Section 234A) on the tax payable, delay in refund, not providing interest on refund @ 0.5% per month, inability to carry forward the losses.
Failure to file penalties
If you file your return late, a penalty applies. The penalty is 5% of the unpaid tax that is due on the filing deadline, plus 1% of this unpaid tax for each complete month that the return is late, up to a maximum of 12 months.
You can avoid a penalty by filing and paying your tax by the due date. If you can't do so, you can apply for an extension of time to file or a payment plan.
You can request a waiver even if you haven't paid all the tax you owe yet, but any failure-to-pay penalty will continue to increase until the tax is completely paid.
Non/Late Payment
A 5% penalty will be levied on the amount of tax unpaid by the due date and an additional penalty of 2% per month on tax remaining unpaid after 60 days from the due date of the prescribed accounting period (capped at a maximum of 50% of the outstanding tax) may also be imposed.
If you didn't pay enough tax throughout the year, either through withholding or by making estimated tax payments, you may have to pay a penalty for underpayment of estimated tax.
Yes. However, as per sub-rule (3) of Rule 164, the taxpayer shall be required to pay the full amount of tax demanded in the notice/ statement / order, as the case may be, including on account of demand of erroneous refund, to avail the benefit of waiver of interest or penalty or both under Section 128A.
The penalty for late filing of GSTR-9C includes a late fee of Rs. 200 per day (Rs. 100 each for CGST and SGST) up to a maximum of 0.5% of the taxpayer's turnover in the relevant state or union territory. Additionally, failure to file may attract further penalties and interest as per GST regulations.
1 – Is there any distinction between Form GSTR-9 & GSTR-9C? Yes, the distinction between the 2 forms is that GSTR-9 is to be furnished via all the regular assessee. And on the other side Form, GSTR 9C is to get furnished via those assessee's whose yearly turnover is Rs 2 cr or more towards that fiscal year.
Example 1 – If GSTR 9 is furnished on 25th December 2025 (due date 31st December 2025) and GSTR 9C is furnished on 7th January 2026. Then no late fees is levied for GSTR 9 as it is furnished within due date. However late fees for 7 days (delay in furnishing of GSTR 9C) is auto populated in GSTR 9C.